| Package | who.ddcc |
| Type | StructureMap |
| Id | Id |
| FHIR Version | R4 |
| Source | http://smart.who.int/ddcc/https://build.fhir.org/ig/WorldHealthOrganization/ddcc/StructureMap-CertDCCtoCoreDataSet.html |
| Url | http://smart.who.int/ddcc/StructureMap/CertDCCtoCoreDataSet |
| Version | 1.0.0 |
| Status | draft |
| Date | 2024-10-17T05:03:04+00:00 |
| Name | CertDCCtoCoreDataSet |
| Experimental | False |
| Realm | uv |
| Authority | who |
| Description | Structure map transforming CertDCC logical model to bundle of Core Data Set logical model |
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Note: links and images are rebased to the (stated) source
Generated Narrative: StructureMap CertDCCtoCoreDataSet
map "http://smart.who.int/ddcc/StructureMap/CertDCCtoCoreDataSet" = "CertDCCtoCoreDataSet" // Structure map transforming CertDCC logical model to bundle of Core Data Set logical model uses "http://smart.who.int/ddcc/StructureDefinition/CertDCC" alias CWTPayload as source uses "http://hl7.org/fhir/StructureDefinition/Bundle" alias DDCCBundle as target uses "http://smart.who.int/ddcc/StructureDefinition/DDCCCoreDataSet" alias DDCC as target uses "http://smart.who.int/ddcc/StructureDefinition/DDCCCoreDataSetVS" alias DDCCVS as target uses "http://smart.who.int/ddcc/StructureDefinition/DDCCCoreDataSetTR" alias DDCCTR as target group CertDCCtoCoreDataSet(source src : CWTPayload, target ddccBundle : DDCCBundle) { src.-260 as hcert then { hcert.1 as dcc then { dcc.v as v -> ddccBundle.entry as outentry, create('http://smart.who.int/ddcc/StructureDefinition/DDCCCoreDataSetVS') as ddcc then { v then DCCtoCoreDataSet(dcc, ddcc) "set DDCC"; v -> ddcc.certificate as certificate then CertDCCtoCoreDataSetCertificate(src, dcc, v, certificate) "set certificate"; v -> ddcc.vaccination as vaccination then VtoCoreDataSetVS(v, vaccination) "set vaccination"; v -> outentry.resource = ddcc "set outentry"; }; dcc.t as t -> ddccBundle.entry as outentry, create('http://smart.who.int/ddcc/StructureDefinition/DDCCCoreDataSetTR') as ddcc then { t then DCCtoCoreDataSet(dcc, ddcc) "set DDCC"; t -> ddcc.certificate as certificate then CertDCCtoCoreDataSetCertificate(src, dcc, t, certificate) "set certificate"; t -> ddcc.test as test then TtoCoreDataSetTR(t, test) "set test"; t -> outentry.resource = ddcc "set outentry"; }; } "eu_DCC_v1"; } "hcert"; } group DCCtoCoreDataSet(source dcc, target ddcc : DDCC) { dcc.dob as birthDate -> ddcc.birthDate = birthDate "set birthDate"; dcc.nam as nam then { nam.gn as given -> ddcc.name = (given.replaceMatches('$', ' ')) "set given name"; nam.fn as family -> ddcc.name as tName, ddcc.name = append(tName, family) "add family name"; }; } group CertDCCtoCoreDataSetCertificate(source src : CWTPayload, source dcc, source g, target certificate) { src -> certificate.period = create('Period') as period then CwtToPeriod(src, period) "set period"; dcc.ver as ver -> certificate.version = ver "set version"; g.ci as ci -> certificate.hcid as hcid, hcid.value = ci "set hcid"; g.is as is -> certificate.issuer = create('Reference') as issuer, issuer.display = is "set issuer"; } group CwtToPeriod(source src : CWTPayload, target tgt : Period) { src.6 as iat -> append(iat, ' seconds') as epoch, tgt.start = (@1970-01-01T00:00:00.000+00:00 + epoch.toQuantity()) "set period start"; src.4 as exp -> append(exp, ' seconds') as epoch, tgt.end = (@1970-01-01T00:00:00.000+00:00 + epoch.toQuantity()) "set period end"; } group VtoCoreDataSetVS(source v, target vaccination) { v.tg as tg -> vaccination.disease as coding, coding.system = 'http://snomed.info/sct', coding.code = tg "set target disease"; v.vp as vp -> vaccination.vaccine as coding, coding.system = 'https://ec.europa.eu/health/documents/community-register/html/', coding.code = vp "set vaccine"; v.mp as mp then { mp -> vaccination.brand as coding, coding.system = 'https://id.uvci.eu/valuesets/vaccine-medicinal-product.json', coding.code = mp "set default brand"; mp -> c('https://ec.europa.eu/health/documents/community-register/html/', mp) as coded then { mp where coded.memberOf('http://smart.who.int/ddcc/ValueSet/vaccine-covid19-euur') -> vaccination.brand = translate(coded, 'http://smart.who.int/ddcc/ConceptMap/vaccine-covid19-euur-to-icd11', 'Coding') "translate COVID19 brand"; } "coding"; }; v.ma as ma -> vaccination.maholder as coding, coding.system = 'https://id.uvci.eu/valuesets/vaccine-mah-manf.json', coding.code = ma "set maholder"; v.dt as date -> vaccination.date = date "set date"; v.dn as dose -> vaccination.dose = dose "set dose"; v.sd as totalDoses -> vaccination.totalDoses = totalDoses "set totalDoses"; v.co as co -> vaccination.country as coding, coding.code = co, coding.system = 'urn:iso:std:iso:3166' "set country"; } group TtoCoreDataSetTR(source t, target test) { t.tg as tg then { tg -> test.pathogen as coding, coding.system = 'http://snomed.info/sct', coding.code = tg "set default pathogen"; tg -> c('http://snomed.info/sct', tg) as coded then { tg where coded.memberOf('http://smart.who.int/ddcc/ValueSet/lab-test-pathogen-covid19-snomed') -> test.pathogen = translate(coded, 'http://smart.who.int/ddcc/ConceptMap/lab-test-pathogen-snomed-to-icd11', 'Coding') "translate COVID19 pathogen"; } "coding"; }; t.tt as tt then { tt -> test.type as coding, coding.system = 'http://loinc.org', coding.code = tt "set default type"; tt -> c('http://loinc.org', tt) as coded then { tt where coded.memberOf('http://smart.who.int/ddcc/ValueSet/lab-test-type-covid19-loinc') -> test.type = translate(coded, 'http://smart.who.int/ddcc/ConceptMap/lab-test-type-covid19-loinc-to-icd11', 'Coding') "translate COVID19 type"; } "coding"; }; t.nm as nm -> test.brand as coding, coding.system = 'https://id.uvci.eu/valuesets/test-manf.json', coding.code = nm "set brand"; t.ma as ma -> test.manufacturer as coding, coding.system = 'https://covid-19-diagnostics.jrc.ec.europa.eu/devices', coding.code = ma "set manufacturer"; t.sc as date -> test.date = date "set date"; t.tr as tr then { tr -> test.result as coding, coding.system = 'http://snomed.info/sct', coding.code = tr "set default result"; tr -> c('http://snomed.info/sct', tr) as coded then { tr where coded.memberOf('http://smart.who.int/ddcc/ValueSet/lab-test-qual-result-snomed') -> test.result = translate(coded, 'http://smart.who.int/ddcc/ConceptMap/lab-test-qual-result-snomed-to-icd11', 'Coding') "translate COVID19 result"; } "coding"; }; t.tc as tc -> test.centre as coding, coding.code = tc "set centre"; t.co as co -> test.country as coding, coding.code = co, coding.system = 'urn:iso:std:iso:3166' "set country"; }
FHIR{
"resourceType" : "StructureMap",
"id" : "CertDCCtoCoreDataSet",
"text" : {
"status" : "generated",
"div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: StructureMap CertDCCtoCoreDataSet</b></p><a name=\"CertDCCtoCoreDataSet\"> </a><a name=\"hcCertDCCtoCoreDataSet\"> </a><a name=\"CertDCCtoCoreDataSet-en-US\"> </a><pre class=\"fml\">\r\n<b>map</b><span style=\"color: navy\"> "</span>http://smart.who.int/ddcc/StructureMap/CertDCCtoCoreDataSet<span style=\"color: navy\">" = "</span>CertDCCtoCoreDataSet<span style=\"color: navy\">"\r\n\r\n</span><span style=\"color: navy\">// </span><span style=\"color: green\">Structure map transforming CertDCC logical model to bundle of Core Data Set logical model</span>\r\n\r\n<b>uses</b><span style=\"color: navy\"> "</span>http://smart.who.int/ddcc/StructureDefinition/CertDCC<span style=\"color: navy\">" </span><b>alias </b>CWTPayload <b>as </b><b>source</b>\r\n<b>uses</b><span style=\"color: navy\"> "</span><a href=\"http://hl7.org/fhir/R4/bundle.html\" title=\"Bundle\">http://hl7.org/fhir/StructureDefinition/Bundle</a><span style=\"color: navy\">" </span><b>alias </b>DDCCBundle <b>as </b><b>target</b>\r\n<b>uses</b><span style=\"color: navy\"> "</span><a href=\"StructureDefinition-DDCCCoreDataSet.html\" title=\"DDCC Core Data Set Logical Model\">http://smart.who.int/ddcc/StructureDefinition/DDCCCoreDataSet</a><span style=\"color: navy\">" </span><b>alias </b>DDCC <b>as </b><b>target</b>\r\n<b>uses</b><span style=\"color: navy\"> "</span><a href=\"StructureDefinition-DDCCCoreDataSetVS.html\" title=\"DDCC Core Data Set Logical Model for Vaccination Status\">http://smart.who.int/ddcc/StructureDefinition/DDCCCoreDataSetVS</a><span style=\"color: navy\">" </span><b>alias </b>DDCCVS <b>as </b><b>target</b>\r\n<b>uses</b><span style=\"color: navy\"> "</span><a href=\"StructureDefinition-DDCCCoreDataSetTR.html\" title=\"DDCC Core Data Set Logical Model for Test Result\">http://smart.who.int/ddcc/StructureDefinition/DDCCCoreDataSetTR</a><span style=\"color: navy\">" </span><b>alias </b>DDCCTR <b>as </b><b>target</b>\r\n\r\n<b>group </b>CertDCCtoCoreDataSet<span style=\"color: navy\">(</span><b>source</b> <span style=\"color: maroon\">src</span><span style=\"color: navy\"> : </span>CWTPayload, <b>target</b> <span style=\"color: maroon\">ddccBundle</span><span style=\"color: navy\"> : </span>DDCCBundle<span style=\"color: navy\">)</span><span style=\"color: navy\"> {\r\n</span> src.-260<b> as </b><span style=\"color: maroon\">hcert</span><b> then</b><span style=\"color: navy\"> {\r\n</span> hcert.1<b> as </b><span style=\"color: maroon\">dcc</span><b> then</b><span style=\"color: navy\"> {\r\n</span> dcc.v<b> as </b><span style=\"color: maroon\">v</span><span style=\"color: navy\"><b> -> </b></span> ddccBundle.entry<b> as </b><span style=\"color: maroon\">outentry</span><span style=\"color: navy\">, </span> <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'http://smart.who.int/ddcc/StructureDefinition/DDCCCoreDataSetVS'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">ddcc</span><b> then</b><span style=\"color: navy\"> {\r\n</span> v<b> then </b>DCCtoCoreDataSet<span style=\"color: navy\">(</span><span style=\"color: maroon\">dcc</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">ddcc</span><span style=\"color: navy\">)</span> <i>"set DDCC"</i><span style=\"color: navy\">;</span>\r\n v<span style=\"color: navy\"><b> -> </b></span>ddcc.certificate<b> as </b><span style=\"color: maroon\">certificate</span><b> then </b>CertDCCtoCoreDataSetCertificate<span style=\"color: navy\">(</span><span style=\"color: maroon\">src</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">dcc</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">v</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">certificate</span><span style=\"color: navy\">)</span> <i>"set certificate"</i><span style=\"color: navy\">;</span>\r\n v<span style=\"color: navy\"><b> -> </b></span>ddcc.vaccination<b> as </b><span style=\"color: maroon\">vaccination</span><b> then </b>VtoCoreDataSetVS<span style=\"color: navy\">(</span><span style=\"color: maroon\">v</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">vaccination</span><span style=\"color: navy\">)</span> <i>"set vaccination"</i><span style=\"color: navy\">;</span>\r\n v<span style=\"color: navy\"><b> -> </b></span>outentry.resource = <span style=\"color: maroon\">ddcc</span> <i>"set outentry"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span><span style=\"color: navy\">;</span>\r\n dcc.t<b> as </b><span style=\"color: maroon\">t</span><span style=\"color: navy\"><b> -> </b></span> ddccBundle.entry<b> as </b><span style=\"color: maroon\">outentry</span><span style=\"color: navy\">, </span> <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'http://smart.who.int/ddcc/StructureDefinition/DDCCCoreDataSetTR'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">ddcc</span><b> then</b><span style=\"color: navy\"> {\r\n</span> t<b> then </b>DCCtoCoreDataSet<span style=\"color: navy\">(</span><span style=\"color: maroon\">dcc</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">ddcc</span><span style=\"color: navy\">)</span> <i>"set DDCC"</i><span style=\"color: navy\">;</span>\r\n t<span style=\"color: navy\"><b> -> </b></span>ddcc.certificate<b> as </b><span style=\"color: maroon\">certificate</span><b> then </b>CertDCCtoCoreDataSetCertificate<span style=\"color: navy\">(</span><span style=\"color: maroon\">src</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">dcc</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">t</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">certificate</span><span style=\"color: navy\">)</span> <i>"set certificate"</i><span style=\"color: navy\">;</span>\r\n t<span style=\"color: navy\"><b> -> </b></span>ddcc.test<b> as </b><span style=\"color: maroon\">test</span><b> then </b>TtoCoreDataSetTR<span style=\"color: navy\">(</span><span style=\"color: maroon\">t</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">test</span><span style=\"color: navy\">)</span> <i>"set test"</i><span style=\"color: navy\">;</span>\r\n t<span style=\"color: navy\"><b> -> </b></span>outentry.resource = <span style=\"color: maroon\">ddcc</span> <i>"set outentry"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"eu_DCC_v1"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"hcert"</i><span style=\"color: navy\">;</span>\r\n<span style=\"color: navy\">}\r\n\r\n</span><b>group </b>DCCtoCoreDataSet<span style=\"color: navy\">(</span><b>source</b> <span style=\"color: maroon\">dcc</span>, <b>target</b> <span style=\"color: maroon\">ddcc</span><span style=\"color: navy\"> : </span>DDCC<span style=\"color: navy\">)</span><span style=\"color: navy\"> {\r\n</span> dcc.dob<b> as </b><span style=\"color: maroon\">birthDate</span><span style=\"color: navy\"><b> -> </b></span>ddcc.birthDate = <span style=\"color: maroon\">birthDate</span> <i>"set birthDate"</i><span style=\"color: navy\">;</span>\r\n dcc.nam<b> as </b><span style=\"color: maroon\">nam</span><b> then</b><span style=\"color: navy\"> {\r\n</span> nam.gn<b> as </b><span style=\"color: maroon\">given</span><span style=\"color: navy\"><b> -> </b></span>ddcc.name = <span style=\"color: navy\">(</span>given.replaceMatches('$', ' ')<span style=\"color: navy\">)</span> <i>"set given name"</i><span style=\"color: navy\">;</span>\r\n nam.fn<b> as </b><span style=\"color: maroon\">family</span><span style=\"color: navy\"><b> -> </b></span> ddcc.name<b> as </b><span style=\"color: maroon\">tName</span><span style=\"color: navy\">, </span> ddcc.name = <b>append</b><span style=\"color: navy\">(</span><span style=\"color: maroon\">tName</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">family</span><span style=\"color: navy\">)</span> <i>"add family name"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span><span style=\"color: navy\">;</span>\r\n<span style=\"color: navy\">}\r\n\r\n</span><b>group </b>CertDCCtoCoreDataSetCertificate<span style=\"color: navy\">(</span><b>source</b> <span style=\"color: maroon\">src</span><span style=\"color: navy\"> : </span>CWTPayload, <b>source</b> <span style=\"color: maroon\">dcc</span>, <b>source</b> <span style=\"color: maroon\">g</span>, <b>target</b> <span style=\"color: maroon\">certificate</span><span style=\"color: navy\">)</span><span style=\"color: navy\"> {\r\n</span> src<span style=\"color: navy\"><b> -> </b></span>certificate.period = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Period'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">period</span><b> then </b>CwtToPeriod<span style=\"color: navy\">(</span><span style=\"color: maroon\">src</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">period</span><span style=\"color: navy\">)</span> <i>"set period"</i><span style=\"color: navy\">;</span>\r\n dcc.ver<b> as </b><span style=\"color: maroon\">ver</span><span style=\"color: navy\"><b> -> </b></span>certificate.version = <span style=\"color: maroon\">ver</span> <i>"set version"</i><span style=\"color: navy\">;</span>\r\n g.ci<b> as </b><span style=\"color: maroon\">ci</span><span style=\"color: navy\"><b> -> </b></span> certificate.hcid<b> as </b><span style=\"color: maroon\">hcid</span><span style=\"color: navy\">, </span> hcid.value = <span style=\"color: maroon\">ci</span> <i>"set hcid"</i><span style=\"color: navy\">;</span>\r\n g.is<b> as </b><span style=\"color: maroon\">is</span><span style=\"color: navy\"><b> -> </b></span> certificate.issuer = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Reference'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">issuer</span><span style=\"color: navy\">, </span> issuer.display = <span style=\"color: maroon\">is</span> <i>"set issuer"</i><span style=\"color: navy\">;</span>\r\n<span style=\"color: navy\">}\r\n\r\n</span><b>group </b>CwtToPeriod<span style=\"color: navy\">(</span><b>source</b> <span style=\"color: maroon\">src</span><span style=\"color: navy\"> : </span>CWTPayload, <b>target</b> <span style=\"color: maroon\">tgt</span><span style=\"color: navy\"> : </span>Period<span style=\"color: navy\">)</span><span style=\"color: navy\"> {\r\n</span> src.6<b> as </b><span style=\"color: maroon\">iat</span><span style=\"color: navy\"><b> -> </b></span> <b>append</b><span style=\"color: navy\">(</span><span style=\"color: maroon\">iat</span><span style=\"color: navy\">, </span><span style=\"color: blue\">' seconds'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">epoch</span><span style=\"color: navy\">, </span> tgt.start = <span style=\"color: navy\">(</span>@1970-01-01T00:00:00.000+00:00 + epoch.toQuantity()<span style=\"color: navy\">)</span> <i>"set period start"</i><span style=\"color: navy\">;</span>\r\n src.4<b> as </b><span style=\"color: maroon\">exp</span><span style=\"color: navy\"><b> -> </b></span> <b>append</b><span style=\"color: navy\">(</span><span style=\"color: maroon\">exp</span><span style=\"color: navy\">, </span><span style=\"color: blue\">' seconds'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">epoch</span><span style=\"color: navy\">, </span> tgt.end = <span style=\"color: navy\">(</span>@1970-01-01T00:00:00.000+00:00 + epoch.toQuantity()<span style=\"color: navy\">)</span> <i>"set period end"</i><span style=\"color: navy\">;</span>\r\n<span style=\"color: navy\">}\r\n\r\n</span><b>group </b>VtoCoreDataSetVS<span style=\"color: navy\">(</span><b>source</b> <span style=\"color: maroon\">v</span>, <b>target</b> <span style=\"color: maroon\">vaccination</span><span style=\"color: navy\">)</span><span style=\"color: navy\"> {\r\n</span> v.tg<b> as </b><span style=\"color: maroon\">tg</span><span style=\"color: navy\"><b> -> </b></span> vaccination.disease<b> as </b><span style=\"color: maroon\">coding</span><span style=\"color: navy\">, </span> coding.system = <span style=\"color: blue\">'http://snomed.info/sct'</span><span style=\"color: navy\">, </span> coding.code = <span style=\"color: maroon\">tg</span> <i>"set target disease"</i><span style=\"color: navy\">;</span>\r\n v.vp<b> as </b><span style=\"color: maroon\">vp</span><span style=\"color: navy\"><b> -> </b></span> vaccination.vaccine<b> as </b><span style=\"color: maroon\">coding</span><span style=\"color: navy\">, </span> coding.system = <span style=\"color: blue\">'https://ec.europa.eu/health/documents/community-register/html/'</span><span style=\"color: navy\">, </span> coding.code = <span style=\"color: maroon\">vp</span> <i>"set vaccine"</i><span style=\"color: navy\">;</span>\r\n v.mp<b> as </b><span style=\"color: maroon\">mp</span><b> then</b><span style=\"color: navy\"> {\r\n</span> mp<span style=\"color: navy\"><b> -> </b></span> vaccination.brand<b> as </b><span style=\"color: maroon\">coding</span><span style=\"color: navy\">, </span> coding.system = <span style=\"color: blue\">'https://id.uvci.eu/valuesets/vaccine-medicinal-product.json'</span><span style=\"color: navy\">, </span> coding.code = <span style=\"color: maroon\">mp</span> <i>"set default brand"</i><span style=\"color: navy\">;</span>\r\n mp<span style=\"color: navy\"><b> -> </b></span><b>c</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'https://ec.europa.eu/health/documents/community-register/html/'</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">mp</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">coded</span><b> then</b><span style=\"color: navy\"> {\r\n</span> mp<b> where </b>coded.memberOf('http://smart.who.int/ddcc/ValueSet/vaccine-covid19-euur')<span style=\"color: navy\"><b> -> </b></span>vaccination.brand = <b>translate</b><span style=\"color: navy\">(</span><span style=\"color: maroon\">coded</span><span style=\"color: navy\">, </span><span style=\"color: blue\">'http://smart.who.int/ddcc/ConceptMap/vaccine-covid19-euur-to-icd11'</span><span style=\"color: navy\">, </span><span style=\"color: blue\">'Coding'</span><span style=\"color: navy\">)</span> <i>"translate COVID19 brand"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"coding"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span><span style=\"color: navy\">;</span>\r\n v.ma<b> as </b><span style=\"color: maroon\">ma</span><span style=\"color: navy\"><b> -> </b></span> vaccination.maholder<b> as </b><span style=\"color: maroon\">coding</span><span style=\"color: navy\">, </span> coding.system = <span style=\"color: blue\">'https://id.uvci.eu/valuesets/vaccine-mah-manf.json'</span><span style=\"color: navy\">, </span> coding.code = <span style=\"color: maroon\">ma</span> <i>"set maholder"</i><span style=\"color: navy\">;</span>\r\n v.dt<b> as </b><span style=\"color: maroon\">date</span><span style=\"color: navy\"><b> -> </b></span>vaccination.date = <span style=\"color: maroon\">date</span> <i>"set date"</i><span style=\"color: navy\">;</span>\r\n v.dn<b> as </b><span style=\"color: maroon\">dose</span><span style=\"color: navy\"><b> -> </b></span>vaccination.dose = <span style=\"color: maroon\">dose</span> <i>"set dose"</i><span style=\"color: navy\">;</span>\r\n v.sd<b> as </b><span style=\"color: maroon\">totalDoses</span><span style=\"color: navy\"><b> -> </b></span>vaccination.totalDoses = <span style=\"color: maroon\">totalDoses</span> <i>"set totalDoses"</i><span style=\"color: navy\">;</span>\r\n v.co<b> as </b><span style=\"color: maroon\">co</span><span style=\"color: navy\"><b> -> </b></span> vaccination.country<b> as </b><span style=\"color: maroon\">coding</span><span style=\"color: navy\">, </span> coding.code = <span style=\"color: maroon\">co</span><span style=\"color: navy\">, </span> coding.system = <span style=\"color: blue\">'urn:iso:std:iso:3166'</span> <i>"set country"</i><span style=\"color: navy\">;</span>\r\n<span style=\"color: navy\">}\r\n\r\n</span><b>group </b>TtoCoreDataSetTR<span style=\"color: navy\">(</span><b>source</b> <span style=\"color: maroon\">t</span>, <b>target</b> <span style=\"color: maroon\">test</span><span style=\"color: navy\">)</span><span style=\"color: navy\"> {\r\n</span> t.tg<b> as </b><span style=\"color: maroon\">tg</span><b> then</b><span style=\"color: navy\"> {\r\n</span> tg<span style=\"color: navy\"><b> -> </b></span> test.pathogen<b> as </b><span style=\"color: maroon\">coding</span><span style=\"color: navy\">, </span> coding.system = <span style=\"color: blue\">'http://snomed.info/sct'</span><span style=\"color: navy\">, </span> coding.code = <span style=\"color: maroon\">tg</span> <i>"set default pathogen"</i><span style=\"color: navy\">;</span>\r\n tg<span style=\"color: navy\"><b> -> </b></span><b>c</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'http://snomed.info/sct'</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">tg</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">coded</span><b> then</b><span style=\"color: navy\"> {\r\n</span> tg<b> where </b>coded.memberOf('http://smart.who.int/ddcc/ValueSet/lab-test-pathogen-covid19-snomed')<span style=\"color: navy\"><b> -> </b></span>test.pathogen = <b>translate</b><span style=\"color: navy\">(</span><span style=\"color: maroon\">coded</span><span style=\"color: navy\">, </span><span style=\"color: blue\">'http://smart.who.int/ddcc/ConceptMap/lab-test-pathogen-snomed-to-icd11'</span><span style=\"color: navy\">, </span><span style=\"color: blue\">'Coding'</span><span style=\"color: navy\">)</span> <i>"translate COVID19 pathogen"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"coding"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span><span style=\"color: navy\">;</span>\r\n t.tt<b> as </b><span style=\"color: maroon\">tt</span><b> then</b><span style=\"color: navy\"> {\r\n</span> tt<span style=\"color: navy\"><b> -> </b></span> test.type<b> as </b><span style=\"color: maroon\">coding</span><span style=\"color: navy\">, </span> coding.system = <span style=\"color: blue\">'http://loinc.org'</span><span style=\"color: navy\">, </span> coding.code = <span style=\"color: maroon\">tt</span> <i>"set default type"</i><span style=\"color: navy\">;</span>\r\n tt<span style=\"color: navy\"><b> -> </b></span><b>c</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'http://loinc.org'</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">tt</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">coded</span><b> then</b><span style=\"color: navy\"> {\r\n</span> tt<b> where </b>coded.memberOf('http://smart.who.int/ddcc/ValueSet/lab-test-type-covid19-loinc')<span style=\"color: navy\"><b> -> </b></span>test.type = <b>translate</b><span style=\"color: navy\">(</span><span style=\"color: maroon\">coded</span><span style=\"color: navy\">, </span><span style=\"color: blue\">'http://smart.who.int/ddcc/ConceptMap/lab-test-type-covid19-loinc-to-icd11'</span><span style=\"color: navy\">, </span><span style=\"color: blue\">'Coding'</span><span style=\"color: navy\">)</span> <i>"translate COVID19 type"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"coding"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span><span style=\"color: navy\">;</span>\r\n t.nm<b> as </b><span style=\"color: maroon\">nm</span><span style=\"color: navy\"><b> -> </b></span> test.brand<b> as </b><span style=\"color: maroon\">coding</span><span style=\"color: navy\">, </span> coding.system = <span style=\"color: blue\">'https://id.uvci.eu/valuesets/test-manf.json'</span><span style=\"color: navy\">, </span> coding.code = <span style=\"color: maroon\">nm</span> <i>"set brand"</i><span style=\"color: navy\">;</span>\r\n t.ma<b> as </b><span style=\"color: maroon\">ma</span><span style=\"color: navy\"><b> -> </b></span> test.manufacturer<b> as </b><span style=\"color: maroon\">coding</span><span style=\"color: navy\">, </span> coding.system = <span style=\"color: blue\">'https://covid-19-diagnostics.jrc.ec.europa.eu/devices'</span><span style=\"color: navy\">, </span> coding.code = <span style=\"color: maroon\">ma</span> <i>"set manufacturer"</i><span style=\"color: navy\">;</span>\r\n t.sc<b> as </b><span style=\"color: maroon\">date</span><span style=\"color: navy\"><b> -> </b></span>test.date = <span style=\"color: maroon\">date</span> <i>"set date"</i><span style=\"color: navy\">;</span>\r\n t.tr<b> as </b><span style=\"color: maroon\">tr</span><b> then</b><span style=\"color: navy\"> {\r\n</span> tr<span style=\"color: navy\"><b> -> </b></span> test.result<b> as </b><span style=\"color: maroon\">coding</span><span style=\"color: navy\">, </span> coding.system = <span style=\"color: blue\">'http://snomed.info/sct'</span><span style=\"color: navy\">, </span> coding.code = <span style=\"color: maroon\">tr</span> <i>"set default result"</i><span style=\"color: navy\">;</span>\r\n tr<span style=\"color: navy\"><b> -> </b></span><b>c</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'http://snomed.info/sct'</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">tr</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">coded</span><b> then</b><span style=\"color: navy\"> {\r\n</span> tr<b> where </b>coded.memberOf('http://smart.who.int/ddcc/ValueSet/lab-test-qual-result-snomed')<span style=\"color: navy\"><b> -> </b></span>test.result = <b>translate</b><span style=\"color: navy\">(</span><span style=\"color: maroon\">coded</span><span style=\"color: navy\">, </span><span style=\"color: blue\">'http://smart.who.int/ddcc/ConceptMap/lab-test-qual-result-snomed-to-icd11'</span><span style=\"color: navy\">, </span><span style=\"color: blue\">'Coding'</span><span style=\"color: navy\">)</span> <i>"translate COVID19 result"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"coding"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span><span style=\"color: navy\">;</span>\r\n t.tc<b> as </b><span style=\"color: maroon\">tc</span><span style=\"color: navy\"><b> -> </b></span> test.centre<b> as </b><span style=\"color: maroon\">coding</span><span style=\"color: navy\">, </span> coding.code = <span style=\"color: maroon\">tc</span> <i>"set centre"</i><span style=\"color: navy\">;</span>\r\n t.co<b> as </b><span style=\"color: maroon\">co</span><span style=\"color: navy\"><b> -> </b></span> test.country<b> as </b><span style=\"color: maroon\">coding</span><span style=\"color: navy\">, </span> coding.code = <span style=\"color: maroon\">co</span><span style=\"color: navy\">, </span> coding.system = <span style=\"color: blue\">'urn:iso:std:iso:3166'</span> <i>"set country"</i><span style=\"color: navy\">;</span>\r\n<span style=\"color: navy\">}\r\n\r\n</span></pre></div>"
},
"url" : "http://smart.who.int/ddcc/StructureMap/CertDCCtoCoreDataSet",
"version" : "1.0.0",
"name" : "CertDCCtoCoreDataSet",
"status" : "draft",
"date" : "2024-10-17T05:03:04+00:00",
"publisher" : "WHO",
"contact" : [
{
"name" : "WHO",
"telecom" : [
{
"system" : "url",
"value" : "http://who.int"
}
]
}
],
"description" : "Structure map transforming CertDCC logical model to bundle of Core Data Set logical model",
"jurisdiction" : [
{
"coding" : [
{
"system" : "http://unstats.un.org/unsd/methods/m49/m49.htm",
"code" : "001"
}
]
}
],
"structure" : [
{
"url" : "http://smart.who.int/ddcc/StructureDefinition/CertDCC",
"mode" : "source",
"alias" : "CWTPayload"
},
{
"url" : "http://hl7.org/fhir/StructureDefinition/Bundle",
"mode" : "target",
"alias" : "DDCCBundle"
},
{
"url" : "http://smart.who.int/ddcc/StructureDefinition/DDCCCoreDataSet",
"mode" : "target",
"alias" : "DDCC"
},
{
"url" : "http://smart.who.int/ddcc/StructureDefinition/DDCCCoreDataSetVS",
"mode" : "target",
"alias" : "DDCCVS"
},
{
"url" : "http://smart.who.int/ddcc/StructureDefinition/DDCCCoreDataSetTR",
"mode" : "target",
"alias" : "DDCCTR"
}
],
"group" : [
{
"name" : "CertDCCtoCoreDataSet",
"typeMode" : "none",
"input" : [
{
"name" : "src",
"type" : "CWTPayload",
"mode" : "source"
},
{
"name" : "ddccBundle",
"type" : "DDCCBundle",
"mode" : "target"
}
],
"rule" : [
{
"name" : "hcert",
"source" : [
{
"context" : "src",
"element" : "-260",
"variable" : "hcert"
}
],
"rule" : [
{
"name" : "eu_DCC_v1",
"source" : [
{
"context" : "hcert",
"element" : "1",
"variable" : "dcc"
}
],
"rule" : [
{
"name" : "v",
"source" : [
{
"context" : "dcc",
"element" : "v",
"variable" : "v"
}
],
"target" : [
{
"context" : "ddccBundle",
"contextType" : "variable",
"element" : "entry",
"variable" : "outentry"
},
{
"contextType" : "variable",
"variable" : "ddcc",
"transform" : "create",
"parameter" : [
{
"valueString" : "http://smart.who.int/ddcc/StructureDefinition/DDCCCoreDataSetVS"
}
]
}
],
"rule" : [
{
"name" : "set DDCC",
"source" : [
{
"context" : "v"
}
],
"dependent" : [
{
"name" : "DCCtoCoreDataSet",
"variable" : [
"dcc",
"ddcc"
]
}
]
},
{
"name" : "set certificate",
"source" : [
{
"context" : "v"
}
],
"target" : [
{
"context" : "ddcc",
"contextType" : "variable",
"element" : "certificate",
"variable" : "certificate"
}
],
"dependent" : [
{
"name" : "CertDCCtoCoreDataSetCertificate",
"variable" : [
"src",
"dcc",
"v",
"certificate"
]
}
]
},
{
"name" : "set vaccination",
"source" : [
{
"context" : "v"
}
],
"target" : [
{
"context" : "ddcc",
"contextType" : "variable",
"element" : "vaccination",
"variable" : "vaccination"
}
],
"dependent" : [
{
"name" : "VtoCoreDataSetVS",
"variable" : [
"v",
"vaccination"
]
}
]
},
{
"name" : "set outentry",
"source" : [
{
"context" : "v"
}
],
"target" : [
{
"context" : "outentry",
"contextType" : "variable",
"element" : "resource",
"transform" : "copy",
"parameter" : [
{
"valueId" : "ddcc"
}
]
}
]
}
]
},
{
"name" : "t",
"source" : [
{
"context" : "dcc",
"element" : "t",
"variable" : "t"
}
],
"target" : [
{
"context" : "ddccBundle",
"contextType" : "variable",
"element" : "entry",
"variable" : "outentry"
},
{
"contextType" : "variable",
"variable" : "ddcc",
"transform" : "create",
"parameter" : [
{
"valueString" : "http://smart.who.int/ddcc/StructureDefinition/DDCCCoreDataSetTR"
}
]
}
],
"rule" : [
{
"name" : "set DDCC",
"source" : [
{
"context" : "t"
}
],
"dependent" : [
{
"name" : "DCCtoCoreDataSet",
"variable" : [
"dcc",
"ddcc"
]
}
]
},
{
"name" : "set certificate",
"source" : [
{
"context" : "t"
}
],
"target" : [
{
"context" : "ddcc",
"contextType" : "variable",
"element" : "certificate",
"variable" : "certificate"
}
],
"dependent" : [
{
"name" : "CertDCCtoCoreDataSetCertificate",
"variable" : [
"src",
"dcc",
"t",
"certificate"
]
}
]
},
{
"name" : "set test",
"source" : [
{
"context" : "t"
}
],
"target" : [
{
"context" : "ddcc",
"contextType" : "variable",
"element" : "test",
"variable" : "test"
}
],
"dependent" : [
{
"name" : "TtoCoreDataSetTR",
"variable" : [
"t",
"test"
]
}
]
},
{
"name" : "set outentry",
"source" : [
{
"context" : "t"
}
],
"target" : [
{
"context" : "outentry",
"contextType" : "variable",
"element" : "resource",
"transform" : "copy",
"parameter" : [
{
"valueId" : "ddcc"
}
]
}
]
}
]
}
]
}
]
}
]
},
{
"name" : "DCCtoCoreDataSet",
"typeMode" : "none",
"input" : [
{
"name" : "dcc",
"mode" : "source"
},
{
"name" : "ddcc",
"type" : "DDCC",
"mode" : "target"
}
],
"rule" : [
{
"name" : "set birthDate",
"source" : [
{
"context" : "dcc",
"element" : "dob",
"variable" : "birthDate"
}
],
"target" : [
{
"context" : "ddcc",
"contextType" : "variable",
"element" : "birthDate",
"transform" : "copy",
"parameter" : [
{
"valueId" : "birthDate"
}
]
}
]
},
{
"name" : "nam",
"source" : [
{
"context" : "dcc",
"element" : "nam",
"variable" : "nam"
}
],
"rule" : [
{
"name" : "set given name",
"source" : [
{
"context" : "nam",
"element" : "gn",
"variable" : "given"
}
],
"target" : [
{
"context" : "ddcc",
"contextType" : "variable",
"element" : "name",
"transform" : "evaluate",
"parameter" : [
{
"valueString" : "given.replaceMatches('$', ' ')"
}
]
}
]
},
{
"name" : "add family name",
"source" : [
{
"context" : "nam",
"element" : "fn",
"variable" : "family"
}
],
"target" : [
{
"context" : "ddcc",
"contextType" : "variable",
"element" : "name",
"variable" : "tName"
},
{
"context" : "ddcc",
"contextType" : "variable",
"element" : "name",
"transform" : "append",
"parameter" : [
{
"valueId" : "tName"
},
{
"valueId" : "family"
}
]
}
]
}
]
}
]
},
{
"name" : "CertDCCtoCoreDataSetCertificate",
"typeMode" : "none",
"input" : [
{
"name" : "src",
"type" : "CWTPayload",
"mode" : "source"
},
{
"name" : "dcc",
"mode" : "source"
},
{
"name" : "g",
"mode" : "source"
},
{
"name" : "certificate",
"mode" : "target"
}
],
"rule" : [
{
"name" : "set period",
"source" : [
{
"context" : "src"
}
],
"target" : [
{
"context" : "certificate",
"contextType" : "variable",
"element" : "period",
"variable" : "period",
"transform" : "create",
"parameter" : [
{
"valueString" : "Period"
}
]
}
],
"dependent" : [
{
"name" : "CwtToPeriod",
"variable" : [
"src",
"period"
]
}
]
},
{
"name" : "set version",
"source" : [
{
"context" : "dcc",
"element" : "ver",
"variable" : "ver"
}
],
"target" : [
{
"context" : "certificate",
"contextType" : "variable",
"element" : "version",
"transform" : "copy",
"parameter" : [
{
"valueId" : "ver"
}
]
}
]
},
{
"name" : "set hcid",
"source" : [
{
"context" : "g",
"element" : "ci",
"variable" : "ci"
}
],
"target" : [
{
"context" : "certificate",
"contextType" : "variable",
"element" : "hcid",
"variable" : "hcid"
},
{
"context" : "hcid",
"contextType" : "variable",
"element" : "value",
"transform" : "copy",
"parameter" : [
{
"valueId" : "ci"
}
]
}
]
},
{
"name" : "set issuer",
"source" : [
{
"context" : "g",
"element" : "is",
"variable" : "is"
}
],
"target" : [
{
"context" : "certificate",
"contextType" : "variable",
"element" : "issuer",
"variable" : "issuer",
"transform" : "create",
"parameter" : [
{
"valueString" : "Reference"
}
]
},
{
"context" : "issuer",
"contextType" : "variable",
"element" : "display",
"transform" : "copy",
"parameter" : [
{
"valueId" : "is"
}
]
}
]
}
]
},
{
"name" : "CwtToPeriod",
"typeMode" : "none",
"input" : [
{
"name" : "src",
"type" : "CWTPayload",
"mode" : "source"
},
{
"name" : "tgt",
"type" : "Period",
"mode" : "target"
}
],
"rule" : [
{
"name" : "set period start",
"source" : [
{
"context" : "src",
"element" : "6",
"variable" : "iat"
}
],
"target" : [
{
"contextType" : "variable",
"variable" : "epoch",
"transform" : "append",
"parameter" : [
{
"valueId" : "iat"
},
{
"valueString" : " seconds"
}
]
},
{
"context" : "tgt",
"contextType" : "variable",
"element" : "start",
"transform" : "evaluate",
"parameter" : [
{
"valueString" : "@1970-01-01T00:00:00.000+00:00 + epoch.toQuantity()"
}
]
}
]
},
{
"name" : "set period end",
"source" : [
{
"context" : "src",
"element" : "4",
"variable" : "exp"
}
],
"target" : [
{
"contextType" : "variable",
"variable" : "epoch",
"transform" : "append",
"parameter" : [
{
"valueId" : "exp"
},
{
"valueString" : " seconds"
}
]
},
{
"context" : "tgt",
"contextType" : "variable",
"element" : "end",
"transform" : "evaluate",
"parameter" : [
{
"valueString" : "@1970-01-01T00:00:00.000+00:00 + epoch.toQuantity()"
}
]
}
]
}
]
},
{
"name" : "VtoCoreDataSetVS",
"typeMode" : "none",
"input" : [
{
"name" : "v",
"mode" : "source"
},
{
"name" : "vaccination",
"mode" : "target"
}
],
"rule" : [
{
"name" : "set target disease",
"source" : [
{
"context" : "v",
"element" : "tg",
"variable" : "tg"
}
],
"target" : [
{
"context" : "vaccination",
"contextType" : "variable",
"element" : "disease",
"variable" : "coding"
},
{
"context" : "coding",
"contextType" : "variable",
"element" : "system",
"transform" : "copy",
"parameter" : [
{
"valueString" : "http://snomed.info/sct"
}
]
},
{
"context" : "coding",
"contextType" : "variable",
"element" : "code",
"transform" : "copy",
"parameter" : [
{
"valueId" : "tg"
}
]
}
]
},
{
"name" : "set vaccine",
"source" : [
{
"context" : "v",
"element" : "vp",
"variable" : "vp"
}
],
"target" : [
{
"context" : "vaccination",
"contextType" : "variable",
"element" : "vaccine",
"variable" : "coding"
},
{
"context" : "coding",
"contextType" : "variable",
"element" : "system",
"transform" : "copy",
"parameter" : [
{
"valueString" : "https://ec.europa.eu/health/documents/community-register/html/"
}
]
},
{
"context" : "coding",
"contextType" : "variable",
"element" : "code",
"transform" : "copy",
"parameter" : [
{
"valueId" : "vp"
}
]
}
]
},
{
"name" : "mp",
"source" : [
{
"context" : "v",
"element" : "mp",
"variable" : "mp"
}
],
"rule" : [
{
"name" : "set default brand",
"source" : [
{
"context" : "mp"
}
],
"target" : [
{
"context" : "vaccination",
"contextType" : "variable",
"element" : "brand",
"variable" : "coding"
},
{
"context" : "coding",
"contextType" : "variable",
"element" : "system",
"transform" : "copy",
"parameter" : [
{
"valueString" : "https://id.uvci.eu/valuesets/vaccine-medicinal-product.json"
}
]
},
{
"context" : "coding",
"contextType" : "variable",
"element" : "code",
"transform" : "copy",
"parameter" : [
{
"valueId" : "mp"
}
]
}
]
},
{
"name" : "coding",
"source" : [
{
"context" : "mp"
}
],
"target" : [
{
"contextType" : "variable",
"variable" : "coded",
"transform" : "c",
"parameter" : [
{
"valueString" : "https://ec.europa.eu/health/documents/community-register/html/"
},
{
"valueId" : "mp"
}
]
}
],
"rule" : [
{
"name" : "translate COVID19 brand",
"source" : [
{
"context" : "mp",
"condition" : "coded.memberOf('http://smart.who.int/ddcc/ValueSet/vaccine-covid19-euur')"
}
],
"target" : [
{
"context" : "vaccination",
"contextType" : "variable",
"element" : "brand",
"transform" : "translate",
"parameter" : [
{
"valueId" : "coded"
},
{
"valueString" : "http://smart.who.int/ddcc/ConceptMap/vaccine-covid19-euur-to-icd11"
},
{
"valueString" : "Coding"
}
]
}
]
}
]
}
]
},
{
"name" : "set maholder",
"source" : [
{
"context" : "v",
"element" : "ma",
"variable" : "ma"
}
],
"target" : [
{
"context" : "vaccination",
"contextType" : "variable",
"element" : "maholder",
"variable" : "coding"
},
{
"context" : "coding",
"contextType" : "variable",
"element" : "system",
"transform" : "copy",
"parameter" : [
{
"valueString" : "https://id.uvci.eu/valuesets/vaccine-mah-manf.json"
}
]
},
{
"context" : "coding",
"contextType" : "variable",
"element" : "code",
"transform" : "copy",
"parameter" : [
{
"valueId" : "ma"
}
]
}
]
},
{
"name" : "set date",
"source" : [
{
"context" : "v",
"element" : "dt",
"variable" : "date"
}
],
"target" : [
{
"context" : "vaccination",
"contextType" : "variable",
"element" : "date",
"transform" : "copy",
"parameter" : [
{
"valueId" : "date"
}
]
}
]
},
{
"name" : "set dose",
"source" : [
{
"context" : "v",
"element" : "dn",
"variable" : "dose"
}
],
"target" : [
{
"context" : "vaccination",
"contextType" : "variable",
"element" : "dose",
"transform" : "copy",
"parameter" : [
{
"valueId" : "dose"
}
]
}
]
},
{
"name" : "set totalDoses",
"source" : [
{
"context" : "v",
"element" : "sd",
"variable" : "totalDoses"
}
],
"target" : [
{
"context" : "vaccination",
"contextType" : "variable",
"element" : "totalDoses",
"transform" : "copy",
"parameter" : [
{
"valueId" : "totalDoses"
}
]
}
]
},
{
"name" : "set country",
"source" : [
{
"context" : "v",
"element" : "co",
"variable" : "co"
}
],
"target" : [
{
"context" : "vaccination",
"contextType" : "variable",
"element" : "country",
"variable" : "coding"
},
{
"context" : "coding",
"contextType" : "variable",
"element" : "code",
"transform" : "copy",
"parameter" : [
{
"valueId" : "co"
}
]
},
{
"context" : "coding",
"contextType" : "variable",
"element" : "system",
"transform" : "copy",
"parameter" : [
{
"valueString" : "urn:iso:std:iso:3166"
}
]
}
]
}
]
},
{
"name" : "TtoCoreDataSetTR",
"typeMode" : "none",
"input" : [
{
"name" : "t",
"mode" : "source"
},
{
"name" : "test",
"mode" : "target"
}
],
"rule" : [
{
"name" : "tg",
"source" : [
{
"context" : "t",
"element" : "tg",
"variable" : "tg"
}
],
"rule" : [
{
"name" : "set default pathogen",
"source" : [
{
"context" : "tg"
}
],
"target" : [
{
"context" : "test",
"contextType" : "variable",
"element" : "pathogen",
"variable" : "coding"
},
{
"context" : "coding",
"contextType" : "variable",
"element" : "system",
"transform" : "copy",
"parameter" : [
{
"valueString" : "http://snomed.info/sct"
}
]
},
{
"context" : "coding",
"contextType" : "variable",
"element" : "code",
"transform" : "copy",
"parameter" : [
{
"valueId" : "tg"
}
]
}
]
},
{
"name" : "coding",
"source" : [
{
"context" : "tg"
}
],
"target" : [
{
"contextType" : "variable",
"variable" : "coded",
"transform" : "c",
"parameter" : [
{
"valueString" : "http://snomed.info/sct"
},
{
"valueId" : "tg"
}
]
}
],
"rule" : [
{
"name" : "translate COVID19 pathogen",
"source" : [
{
"context" : "tg",
"condition" : "coded.memberOf('http://smart.who.int/ddcc/ValueSet/lab-test-pathogen-covid19-snomed')"
}
],
"target" : [
{
"context" : "test",
"contextType" : "variable",
"element" : "pathogen",
"transform" : "translate",
"parameter" : [
{
"valueId" : "coded"
},
{
"valueString" : "http://smart.who.int/ddcc/ConceptMap/lab-test-pathogen-snomed-to-icd11"
},
{
"valueString" : "Coding"
}
]
}
]
}
]
}
]
},
{
"name" : "tt",
"source" : [
{
"context" : "t",
"element" : "tt",
"variable" : "tt"
}
],
"rule" : [
{
"name" : "set default type",
"source" : [
{
"context" : "tt"
}
],
"target" : [
{
"context" : "test",
"contextType" : "variable",
"element" : "type",
"variable" : "coding"
},
{
"context" : "coding",
"contextType" : "variable",
"element" : "system",
"transform" : "copy",
"parameter" : [
{
"valueString" : "http://loinc.org"
}
]
},
{
"context" : "coding",
"contextType" : "variable",
"element" : "code",
"transform" : "copy",
"parameter" : [
{
"valueId" : "tt"
}
]
}
]
},
{
"name" : "coding",
"source" : [
{
"context" : "tt"
}
],
"target" : [
{
"contextType" : "variable",
"variable" : "coded",
"transform" : "c",
"parameter" : [
{
"valueString" : "http://loinc.org"
},
{
"valueId" : "tt"
}
]
}
],
"rule" : [
{
"name" : "translate COVID19 type",
"source" : [
{
"context" : "tt",
"condition" : "coded.memberOf('http://smart.who.int/ddcc/ValueSet/lab-test-type-covid19-loinc')"
}
],
"target" : [
{
"context" : "test",
"contextType" : "variable",
"element" : "type",
"transform" : "translate",
"parameter" : [
{
"valueId" : "coded"
},
{
"valueString" : "http://smart.who.int/ddcc/ConceptMap/lab-test-type-covid19-loinc-to-icd11"
},
{
"valueString" : "Coding"
}
]
}
]
}
]
}
]
},
{
"name" : "set brand",
"source" : [
{
"context" : "t",
"element" : "nm",
"variable" : "nm"
}
],
"target" : [
{
"context" : "test",
"contextType" : "variable",
"element" : "brand",
"variable" : "coding"
},
{
"context" : "coding",
"contextType" : "variable",
"element" : "system",
"transform" : "copy",
"parameter" : [
{
"valueString" : "https://id.uvci.eu/valuesets/test-manf.json"
}
]
},
{
"context" : "coding",
"contextType" : "variable",
"element" : "code",
"transform" : "copy",
"parameter" : [
{
"valueId" : "nm"
}
]
}
]
},
{
"name" : "set manufacturer",
"source" : [
{
"context" : "t",
"element" : "ma",
"variable" : "ma"
}
],
"target" : [
{
"context" : "test",
"contextType" : "variable",
"element" : "manufacturer",
"variable" : "coding"
},
{
"context" : "coding",
"contextType" : "variable",
"element" : "system",
"transform" : "copy",
"parameter" : [
{
"valueString" : "https://covid-19-diagnostics.jrc.ec.europa.eu/devices"
}
]
},
{
"context" : "coding",
"contextType" : "variable",
"element" : "code",
"transform" : "copy",
"parameter" : [
{
"valueId" : "ma"
}
]
}
]
},
{
"name" : "set date",
"source" : [
{
"context" : "t",
"element" : "sc",
"variable" : "date"
}
],
"target" : [
{
"context" : "test",
"contextType" : "variable",
"element" : "date",
"transform" : "copy",
"parameter" : [
{
"valueId" : "date"
}
]
}
]
},
{
"name" : "tr",
"source" : [
{
"context" : "t",
"element" : "tr",
"variable" : "tr"
}
],
"rule" : [
{
"name" : "set default result",
"source" : [
{
"context" : "tr"
}
],
"target" : [
{
"context" : "test",
"contextType" : "variable",
"element" : "result",
"variable" : "coding"
},
{
"context" : "coding",
"contextType" : "variable",
"element" : "system",
"transform" : "copy",
"parameter" : [
{
"valueString" : "http://snomed.info/sct"
}
]
},
{
"context" : "coding",
"contextType" : "variable",
"element" : "code",
"transform" : "copy",
"parameter" : [
{
"valueId" : "tr"
}
]
}
]
},
{
"name" : "coding",
"source" : [
{
"context" : "tr"
}
],
"target" : [
{
"contextType" : "variable",
"variable" : "coded",
"transform" : "c",
"parameter" : [
{
"valueString" : "http://snomed.info/sct"
},
{
"valueId" : "tr"
}
]
}
],
"rule" : [
{
"name" : "translate COVID19 result",
"source" : [
{
"context" : "tr",
"condition" : "coded.memberOf('http://smart.who.int/ddcc/ValueSet/lab-test-qual-result-snomed')"
}
],
"target" : [
{
"context" : "test",
"contextType" : "variable",
"element" : "result",
"transform" : "translate",
"parameter" : [
{
"valueId" : "coded"
},
{
"valueString" : "http://smart.who.int/ddcc/ConceptMap/lab-test-qual-result-snomed-to-icd11"
},
{
"valueString" : "Coding"
}
]
}
]
}
]
}
]
},
{
"name" : "set centre",
"source" : [
{
"context" : "t",
"element" : "tc",
"variable" : "tc"
}
],
"target" : [
{
"context" : "test",
"contextType" : "variable",
"element" : "centre",
"variable" : "coding"
},
{
"context" : "coding",
"contextType" : "variable",
"element" : "code",
"transform" : "copy",
"parameter" : [
{
"valueId" : "tc"
}
]
}
]
},
{
"name" : "set country",
"source" : [
{
"context" : "t",
"element" : "co",
"variable" : "co"
}
],
"target" : [
{
"context" : "test",
"contextType" : "variable",
"element" : "country",
"variable" : "coding"
},
{
"context" : "coding",
"contextType" : "variable",
"element" : "code",
"transform" : "copy",
"parameter" : [
{
"valueId" : "co"
}
]
},
{
"context" : "coding",
"contextType" : "variable",
"element" : "system",
"transform" : "copy",
"parameter" : [
{
"valueString" : "urn:iso:std:iso:3166"
}
]
}
]
}
]
}
]
}
XIG built as of ??metadata-date??. Found ??metadata-resources?? resources in ??metadata-packages?? packages.